Software Tools

Covalent Pocket Mapper

In biology a blind pan is a powerful technique that allows you to obtain ligands for structures that are not well characterized, as well as bypass issues like protein denaturation that plague typical pans against a purified protein target bound to a plate.

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Crackle Gene

Crackle Gene is a user-friendly tool for comparing two complete prokaryotic genomes and pinpointing exactly what changed between them — down to the individual base, and up to the biological consequence of that change. You give it a reference genome and an evolved (or otherwise modified) genome, and it tells you where they differ, whether each difference falls inside a gene, and what that difference does to the encoded protein.

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Ongoing Projects

Peptide functionalized LNPs as an alternative to ADCs

Antibody-drug conjugates have transformed cancer treatment, but the ones used against lung cancer carry a serious, often fatal side effect: interstitial lung disease. Peptide-functionalized LNPs offer an intriguing alternative; they are far less immunogenic, faster and cheaper to produce, and lack the structures thought to bring on ILD in these patients.
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Generating a peptide to reduce glioblastoma infiltration

Glioblastomas are among the most deadly cancers due in large part to how they interact with healthy tissue at the tumor margin. They tend to be highly infiltrative, extending cancerous projections far into healthy tissue. This makes complete clean resection by a neurosurgeon essentially impossible in most cases. Here I present data exploring a mechanism that may contribute to this effect, as well as data on a peptide I generated against glypican 5 that dampens crucial drivers of this effect.
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